• Mostafa M. Rezaee

  • Data Scientist

Mostafa M. Rezaee

About Me

Data Science, PhD | AI Scientist   

• Data Science Intern at Sanofi in Cambridge, Massachusetts, USA.

  • Focusing on Wearable Medical Devices:
    • Developed a Python package to implement multiple algorithms and run diagnostics.
    • Pre-processed Accelerometer data for training LSTM models for later use in wearable medical devices. 
    • Contributed to decision-making as a Digital Health Analytics (DHA) team member.
    • Gained invaluable insights into FDA regulatory frameworks for Digital Health Technologies (DHT).

Ph.D. in Data Science: Please see my LinkedIn recommendations.

www.SaveBirds.app:
The “www.SaveBirds.app” is my Ph.D. project. It is a Data Science web application that helps manage 40,000 Protected Areas (PAs) across North America. SaveBirds fuels the US$75 billion wildlife-watching industry indirectly.

Bird Atlas Generator: Developed the first publicly available comprehensive Bird Atlas Generator of North American Breeding Bird Survey data, which is available at SaveBirds. 

• Publications30 publications, including 9 Journal articles & 21 full conference papers. Moreover, 6 under-preparation journal articles are outlined at SaveBirds. All the publications are computational studies using modeling and simulation approaches.

Experience

Summer 2022 | Data Science Intern at Sanofi in Cambridge, Massachusetts 

  • Focusing on Wearable Medical Devices
  • For my project, I developed a Python package to implement multiple algorithms and run diagnostics. Data preprocessing is also covered.

2019 – Present | Research Assistant, Data Science program, Bowling Green State University, Ohio, USA.

  • www.SaveBirds.app 
    The “www.SaveBirds.app” is my Ph.D. project. It is a Data Science web application that helps manage 40,000 Protected Areas (PAs) across North America. SaveBirds fuels the US$75 billion wildlife-watching industry indirectly.

  • The Bird Atlas Generator
    As part of my Ph.D. project, I developed the first publicly available comprehensive Bird Atlas Generator of North American Breeding Bird Survey data, which is available at SaveBirds.

2014 – 2019 | Deputy Director of Research and Technology, Farabi Institute, Khuzestan, Iran.

I was in charge of determining the general research policies of the institute. Farabi is one of the research institutes under the Ministry of Education of Iran. We were a group of research teachers whose mission is to train the next generation of Iranian researchers.

2013 – 2014 | Adjunct professor, Payame Noor University, Khuzestan, Iran.

I supervised the specialized projects of undergraduate students.

2010 – 2013 | Teaching Assistant, Department of Physics, Shahid Chamran University of Ahvaz, Khuzestan, Iran.

I was the TA of master’s students for the “Computational methods in physics” course.

2003 – 2010 | Physics Teacher, Ministry of Education, Khuzestan, Iran.

While my primary responsibility was teaching physics, I introduced and implemented the American style of teaching physics in Iran. In the new style, the teachers are stationary instead of the traditional approach, which moves teachers and keeps students in the same room for all courses. The new approach is more effective by far for practical courses like physics.

Research

My research has always centered on the field of health using two independent directions:

Prevention through developing new technologies to protect the environment,

Treatment by developing new technologies for new drugs or diagnostic/therapeutic medical devices.

 
  • www.SaveBirds.app 

The “www.SaveBirds.app” is my Ph.D. project. It is a novel Data Science web application that helps manage 40,000 Protected Areas (PAs) across North America. Also, SaveBirds fuels the US$75 billion wildlife-watching industry indirectly. Since 1966, the Breeding Bird Survey (BBS) has been collecting structured data of 800 bird species from 300,000 locations, across North America as the BBS dataset. In the presence of this valuable dataset, I developed SaveBirds to enable ecologists, biologists, landscape managers, and authorities to evaluate the status of the PAs in any region of North America.

  • Bird Atlas Generator

As part of my Ph.D. project, I developed the first publicly available comprehensive Bird Atlas Generator of North American Breeding Bird Survey data which is available at SaveBirds. Statistical studies on bird biodiversity cannot be conducted without an adequate atlas. While atlases have been produced, they have not been made publicly available. On the other hand, our atlas facilitates many studies and speeds up the process of research in ecology since it is based on the BBS Dataset, which is unique in a variety of ways. In addition, SaveBirds now offers a section where users can independently generate their own bird atlases for any year interval and any region in North America. We have called this section Bird Atlas Generator.

  • Wearable Medical Devices

In the summer of 2022, I joined a project at Sanofi in Cambridge, MA, to work on Wearable Medical Devices. As a Data Science intern, I was responsible for developing a Python package to implement multiple algorithms and run diagnostics. I also covered data preprocessing on accelerometer data. These devices monitor gait and physical activity and sleep with prevention value. They are of great help to Parkinson’s patients in determining their drug dosage and disease status at the convenience of their homes. Currently, Parkinson’s patients must visit medical centers in person to monitor the effectiveness of their medications. However, taking care of patients is done slowly due to the lack of specialists in this field as well as the lack of advanced equipment. Also, the monitoring cost is very high, and many people cannot afford it. The device, we were working on, is easily attached to their belt, records the patient’s movement information, and sends it to the patient’s medical file via Wi-Fi. This way, the monitoring cost is significantly reduced, the patient does not need to visit at all, and all monitoring is done remotely.

  • NonLinear Optics

In nonlinear optics, our focus was on the thermal effects of lasers on nonlinear crystals. Laser production using nonlinear crystals is much more efficient and cheaper than previous laser production methods. But the problem is that due to the absorption of laser light in the nonlinear crystal, the temperature of the crystal rises too high, and the crystal burns. By discovering the mechanism of heat generation and propagation in nonlinear crystals, we help the manufacturers of these lasers to prevent premature burning of these crystals, thus significantly reducing the maintenance cost of these lasers. These lasers have a variety of applications in industry, such as medicine, diagnosis, and evaluation of air pollutants.

    • Treatment Impact: (in medical lasers)

With proper use, lasers allow the surgeon to accomplish more complex tasks, reduce blood loss, decrease postoperative discomfort, reduce the risk of wound infection, and improve wound healing.

    • Prevention Impact Through Environmental conservation: (in air pollution monitoring lasers)

Rayleigh scattering laser radiation is elastically scattered from atoms or molecules with no frequency change. Several remote sensing instruments are used to measure pollutants.

  • Quantum dots

In the domain of quantum dots, our focus has been on recognizing the optical properties of the most widely used quantum dots (GaN/AlN and InAs/GaAs). The results of our research help manufacturers of new generation solar cells and personalized medicines to make more efficient products. In fact, to use any substance, its physical properties must be known, and in the case of quantum dots, their optical properties are the most important. Because after learning their optical properties, their interaction with electromagnetic waves can be exploited in production.

    • Treatment Impact: (in personalized medicine)

Quantum dots possess unique photophysical properties suitable for addressing the needs of personalized medicine. Utilizing multicolor QD probes (A) and tuning the emission color by the particle size allows multiplexed biomarker detection. Narrow emission spectra (B) along with efficient light absorption throughout a wide range enable simultaneous imaging of several biomarkers critical for molecular profiling of diseases.

    • Prevention Impact Through Environmental Conservation: (in solar cells)

Quantum dots have the potential to increase the efficiency of converting sunlight into energy dramatically — perhaps even doubling it in some devices — because of their ability to generate more than one bound electron-hole pair, or exciton, per incoming photon

 

Mostafa's Research Stream: My research has always centered on the field of health using two independent directions: prevention and treatment. These include prevention through developing new technologies to protect the environment and treatment by developing new technologies for new drugs or diagnostic/therapeutic medical devices.

Education

· PhD | Data Science | 2019 – present | Bowling Green State University, Ohio, USA.

· MSc | Physics             | 2010 – 2013      | Shahid Chamran University of Ahvaz, Khuzestan, Iran.

· BSc | Physics              | 1999 – 2003      | Shahid Chamran University of Ahvaz, Khuzestan, Iran.  

Publications

30 publications including 9 Journal articles & 21 full conference papers. Moreover, 6 under-preparation journal articles are outlined at SaveBirds. All the publications are computational studies using modeling and simulation approaches.

  1. M. Mohammad Rezaee, M. Sabaeian (supervisor), A. Motazedian, and F. S. Jalil-Abadi, “A depleted and numerical model for pulsed Gaussian wave type II second harmonic generation,” arXiv preprint arXiv:2112.13422 (2021).
  2. M. Mohammad Rezaee, M. Sabaeian (supervisor), A. Motazedian, F. S. Jalil-Abadi, H. Askari, and I. Khazrak, “Thermally induced phase mismatching in a repetitively Gaussian pulsed pumping KTP crystal: a spatiotemporal treatment,” Applied Optics. 54, 4781-4788 (2015).
  3. M. Mohammad Rezaee, M. Sabaeian (supervisor), A. Motazedian, F. S. Jalil-Abadi, and A. Khaledi-Nasab, “Complete anisotropic time-dependent heat equation in KTP crystal under repetitively pulsed Gaussian beams: A numerical approach,” Applied Optics 54, 1241–1249 (2015).
  4. M. Sabaeian (supervisor), F. S. Jalil-Abadi, M. Mohammad Rezaee, and A. Motazedian, “Temperature increase effects on a double-pass cavity type II second harmonic generation: a model for depleted Gaussian continuous waves,” Applied Optics 54, 869–875 (2015).
  5. M. Sabaeian (supervisor), F. S. Jalil-Abadi, M. Mohammad Rezaee, and A. Motazedian, “Temperature Distribution in a Gaussian End-Pumped Nonlinear KTP Crystal: the Temperature Dependence of Thermal Conductivity and Radiation Boundary Condition,” Brazilian Journal of Physics (2015) 45:1–9
  6. M. Sabaeian (supervisor), F. S. Jalil-Abadi, M. Mohammad Rezaee, and A. Motazedian, “Heat coupled Gaussian continuous-wave double-pass type-II second harmonic generation: inclusion of thermally induced phase mismatching and thermal lensing,” Optics Express 22, 25615–25628 (2014).
  7. M. Sabaeian (supervisor), A. Motazedian, M. Mohammad Rezaee, and F. S. Jalil-Abadi, “Bessel-Gauss beams: pulsed Bessel-Gauss beams: a depleted wave model for type II second harmonic generation,” Applied Optics 53, 7691–7696 (2014).
  8. A. Khaledi-Nasab, M. Sabaeian (supervisor), M. Rezaie, and M. Mohammad Rezaee, “Linear and Nonlinear Tunable Optical Properties of intersubband transitions in GaN/AlN Quantum Dots in Presence and Absence of Wetting Layer” JOURNAL OF THE EUROPEAN OPTICAL SOCIETY – RAPID PUBLICATIONS 9, 14011-1_14011-9 (2014).
  9. A. Khaledi-Nasab, M. Sabaeian (supervisor), M. Sahrai, V. Fallahi, and M. Mohammad Rezaee, “The effect of Woods–Saxon potential on envelope function, intersubband dispersion curves and group velocity of InAs/GaAs quantum dots with wetting layer” Physica E: Low-Dimensional Systems and Nanostructures 60, 42-49 (2014).
To introduce different Impact metrics and discuss their pros and cons, I made a presentation that I believe you will find interesting. The presentation is publicly available here. In general, The ISI classifies journals according to their specialized fields (scop). For example, Optics is one of these categories. Based on Eigenfactor which I trust the most, the first place in this field goes to Optics Express, followed by Applied Optics in fifth place. I am delighted that one of our articles has been published in Optics Express, and four other articles have been published in Applied Optics.

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    Recommendations

    Ali Khaledi | research Scientist @ AWS | Amazon

    Mostafa’s Co-author

    I first met Mostafa in 2009 when I was an undergraduate student. Since then we worked on many projects together, that include writing papers, immigration to the US (a few years apart), and changing our focus areas, to name a few. There are a lot of things that are unique to Mostafa. One of those is his consistency, Mostafa is always there and he delivers. By that I mean, even when there are numerous personal issues, but he never forget his promises to anyone. Another quality is Mostafa's generosity with his time and money. In this 2023 piece in Science magazine, I talk about how Mostafa saved my kidney https://www.science.org/content/article/almost-sold-kidney-pursue-phd

    Mostafa is mentoring and helping many people for free. Even though he is graduate student with limited income, I know for a fact Mostafa paid a plane ticket for an incoming student the US since the student could not afford it, or in another instance he donated a laptop to graduate student.

    If you are hiring for a job related to Data Science or ML, I highly recommend hiring Mostafa. if we were not on hiring freeze on Amazon, Mostafa would have passed the interviews with flying colors.

    Reference: Linkedin

    Shuchismita Sarkar | Assistant Professor | Bowling Green State University

    Mostafa’s Teacher

    I taught Mostafa in two data science courses at BGSU. He is motivated and hardworking. Both classes had term projects and I noticed that he has an eye for details. It was a pleasure to read his well written and thorough assignments. He has a friendly personality. He would be an asset to any organization.

    Reference: Linkedin

    Robert C. Green II | Associate professor | Bowling Green Sate University

    Mostafa’s Advisor

    Mostafa joined my research team as a Data Science Ph.D. student with a strong background in research and computational Physics. From the moment Mostafa began his research, he proved to be effective. His commitment, teamwork, discipline, and perseverance are evident when working with Mostafa on a project. There is always a sense of reliability in Mostafa's results because he is meticulous and thorough. Mostafa adheres to best practices not only in coding but also in maintaining the codes so that it is straightforward to review what he has done. Mostafa balances quality and quantity well. Additionally, Mostafa is quite adept at finding collaborators of significant skill to address the needs of a project.

    Overall, Mostafa is an individual of significant character that produces quality work that is well balanced with quantity.

    Reference: Linkedin

    Andrew Gregory | Assistant Professor | University of North Texas

    Mostafa's Co-advisor

    Mostafa and I worked together on his dissertation, which was to develop a web application to quickly mine and clean publicly available Breeding Bird Survey Data. This database contains over 5000 locations that have been repeatedly sampled annually for more than 50 years. Each survey point has ~30-100 data records. The data are collected following an established protocol, but variations occur and some years are missed. The tool Mostafa created allows users to define what spatial extent, which points, species, and which years they want data compiled for and then provides them with those data and basic summary statistics. The tool is highly efficient and most queries, even complex ones, take only a few seconds to execute. This tool is a testament to Mostafa's coding and problem solving skills.

    In more general terms, Mostafa is hardworking, convivial, and easy to communicate with. He has high attention to detail and produces high quality results. He is creative in his problem solving skills, and readily asks pertinent questions to ensure the accuracy of the products he creates.

    I can strongly recommend Mostafa for about any position he would seek and would be glad to talk with you in further detail about how Mostafa's talents and work ethic might more specifically meet your organizations needs.

    Reference: Linkedin

    Hillol Sarker | Data Scientist | Sanofi

    Mostafa's Colleague at Sanofi

    Mostafa was a summer intern in our group. He is a great collaborator and always a pleasure to interact with. His basic foundation is strong, enabling him to understand complex data science concepts quickly. Being hard-working by nature, he respects deadlines and delivers on time. I wish him all the success in his future endeavor.

    Reference: Linkedin

    Elias Abou Zeid | Associate Director of Data Science, AI & Deep Analytics | Sanofi

    Mostafa's manager at Sanofi

    I supervised Mostafa as intern in my team during 2022 summer. Mostafa is hard working, eager to learn. He delivers on time and has a sound reasoning as a data scientist.

    Reference: Linkedin

    Mehdi Rezaie | Postdoctoral Researcher

    Mostafa's Co-author

    As an intimate friend, I have known Mostafa for more than 5 years. At that time, I was a senior undergraduate student while he was doing his master programme in the graduate school. His name reminds me of his undeniable abilities in algorithms, not to mention his remarkable power in simulations and numerical techniques. I believe he is very genius especially in the way he organizes group activities to a great extent. I am sure that he will do some astonishing researches if he receive some supports and adequate facilities. Should you have any more question, do not hesitate to contact.

    Reference: Linkedin